• Tang, M. (STAT) – Bayesian Modeling and Scalable Inference for Count Time Series in Infectious Disease Surveillance

    Engineering 2 Engineering 2 1156 High Street, Santa Cruz, CA
    Hybrid Event

    Real-time monitoring of infectious disease outbreaks calls for statistical models that recover interpretable quantities such as the time-varying reproduction number from noisy count data, track posterior uncertainty, and run on time scales compatible with daily updates. Existing methods address these aims through separate model classes. Discretized Hawkes processes, Poisson autoregressions, and distributed lag models each […]

  • Carrión, H. (CSE) – Deep Learning Algorithms for Medical Image Representation Learning and Understanding

    Virtual Event

    AI-assisted clinical decisions in medicine, and particularly in dermatology, demand fine-grained understanding across diverse skin tones, body sites, and disease types, yet expert-annotated datasets are scarce, demographically imbalanced, and almost devoid of rare presentations. This dissertation develops four deep learning systems for this low-label, low-coverage regime. We introduce HealNet, which learns wound healing stages from […]

  • Wang, Z. (CSE) – From Static Alignment to Adaptive Safety: Toward Reliable and Capable AI Systems

    Virtual Event

    Modern AI systems are rapidly moving beyond static text generation toward capable models and agents that reason, use tools, store memories, and update persistent state, yet safety methods still often assume a fixed model whose behavior can be controlled by output-level refusal. This leaves critical gaps in understanding why aligned models fail under adversarial pressure, […]

  • Carrión, H. (CSE) – Deep Learning Algorithms for Medical Image Representation Learning and Understanding

    Virtual Event

    AI-assisted clinical decisions in medicine, and particularly in dermatology, demand fine-grained understanding across diverse skin tones, body sites, and disease types, yet expert-annotated datasets are scarce, demographically imbalanced, and almost devoid of rare presentations. This dissertation develops four deep learning systems for this low-label, low-coverage regime. We introduce HealNet, which learns wound healing stages from […]

  • Levine, R. (CSE) – Validating GPU Memory Consistency and Safety at Scale

    Engineering 2 Engineering 2 1156 High Street, Santa Cruz, CA
    Hybrid Event

    Graphics Processing Units (GPUs) have become essential platforms for parallel computing, supporting applications far beyond graphics. Central to GPU programming models is its memory consistency specification (MCS), which defines the semantics of concurrent shared-memory operations and interacts with other language features to determine security guarantees such as memory safety. Understanding whether implementations conform to an […]

  • Scott, J. (CSE) – Mechanistic Specialization Does Not Guarantee Performance: Evidence from Dual AttentionTransformers

    Virtual Event

    Dual Attention Transformers (DATs) extend decoder-only Transformers with a dedicated relational-attention stream, making them a natural architecture for abstract identity rules such asABA and ABB. Surprisingly, we find that comparably sized GPT-2 models outperform DATs on these tasks. We investigate this gap with two complementary mechanistic analyses. First, causal mediation analysis shows that DATs exhibit […]

  • Kembay, A. (ECE) – Sparse and Continual Foundations for Adaptive General Intelligence

    Engineering 2 Engineering 2 1156 High Street, Santa Cruz, CA
    Hybrid Event

    While the human brain learns continually, mastering new tasks without forgetting the old and adapting to unfamiliar ones from context alone, modern neural networks still lack both. To bridge the gap between biological adaptivity and modern AI, we have established foundational work on sparsity as a computational principle at three levels of neural computation, through […]

  • Calicchio, A. (BMEB) – Comparison of long-read sequencing and analysis methods for transcriptome analysis

    Biomedical Sciences Building 575 McLaughlin Drive
    Hybrid Event

    Alternative splicing, the process generating different RNA isoforms from a single gene, is considered one of the main factors driving increased organism complexity in eukaryotes. Variations in isoform and gene expression produce the functional differences that give rise to different cell types and, in some cases, result in disease. Long-read RNA sequencing has transformed our […]

  • Zhao, Z. (CSE) – TOWARD VERIFIABLE REASONING IN LLMS

    Silicon Valley Campus 3175 Bowers Avenue, Santa Clara, CA, United States
    Hybrid Event

    Chain-of-thought (CoT) prompting can improve final-answer performance, but it does not guarantee that intermediate reasoning steps are faithful, valid, or checkable. This proposal studies how formal methods can make natural-language […]

  • Nikolakakis, M. (ECE) – Learned Gridless Representations of Cone Beam Computed Tomography Scans

    Engineering 2 Engineering 2 1156 High Street, Santa Cruz, CA
    Hybrid Event

    Medical image representation has long been dominated by voxel-grid matrices. While their inherent structure and order work efficiently for various linear transformations and provide a seamless visualization method on monitors, they fail to preserve the topology of the scan and to encode sparse information in a memory-efficient way.   The recent emergence of machine learning-based continuous coordinate-based […]

  • Condon, C. (BMEB) – Genomic conflict across scales

    Biomedical Sciences Building 575 McLaughlin Drive

    Genomes are often viewed as cooperative systems in which genes work together to support organismal function. Yet genetic elements can also act in ways that favor their own transmission or persistence, creating conflict within the genome. In this talk, I examine the evolutionary and functional consequences of such genomic conflict across three systems. First, I […]