Ph.D. Presentations

Autonomous Cyber Operations (ACO) agents promise effective security automation with minimal human intervention, yet their deployment raises three interconnected challenges: agents must be realistic (reproducing diverse attacker sophistication), secure (preventing autonomy from becoming an attack surface), and feasible (safely replicating human behavior at full autonomy). We argue that these three properties are requirements for ACO […]

Modern datacenter CPUs lose 25–66% of execution cycles to instruction-delivery stalls. This bottleneck persists, despite the recent trend towards accelerators and GPUs, as there is continuing demand by applications that only execute on CPUs. Two workload classes dominate today’s datacenter execution cycles: hyperscale server software (databases, build systems, and content stores), whose large instruction footprints […]

This dissertation investigates how neuromorphic and brain-inspired principles can guide the design of efficient neural language architectures. It addresses two central limitations of modern Transformer-based language models: memory growth with context length and high computational cost from dense matrix multiplication. Through studies of spiking neural networks, linear-recurrent language models, hybrid attention architectures, MatMul-free models, and […]

Recently, a class of non-invasive hardware side-channel attacks has been discovered in field-programmable gate arrays (FPGAs). These attacks extract remnants of prior users’ activity that persist as transistor defect states within reconfigurable routing resources. These remnants are known as FPGA Pentimenti. Resistive random-access memory (ReRAM) is a compelling candidate for pentimenti-like attacks beyond FPGAs. However, […]

The electric grid is essential to modern society, and recent developments such as renewable energy sources (RESs), battery energy storage systems (ESSs), and microgrids (MGs) have necessitated novel computational methods for planning and operations. Machine learning offers a promising lever here, both as an accelerator for and proxy to traditional optimization-based problems. In this thesis, […]

Intracellular symbionts are microorganisms, such as bacteria, that live within host cells. These associations are widespread throughout the invertebrate tree of life, and can perform a diversity of key metabolic, […]

Centromeres ensure proper chromosome segregation during cell division, yet the organization and regulation of centromeric chromatin within satellite DNA arrays remain incompletely understood. Here, we leverage the complete diploid human […]

As quantum computing transitions from theory to practice, understanding which algorithms suit near-term devices becomes critical. Current quantum computers are severely constrained by limited qubit counts, short coherence times, and […]

Many genetics pipelines start by aligning sequencing reads to a reference genome. Aligners attempt to find the position in the reference sequence which best matches the read sequence, but this […]